你好,
我需要高效地将 Parquet 格式的大型数据集(可能高达数 GB)导入 JMP。我在这里观看了 CSV 导入的指导视频,并使用了 pd.read_parquet 函数。我担心的是,导入效率会非常低,因为这些表既需要作为 Pandas df 对象占用内存,又需要作为 JMP dt 对象占用内存。有没有更适合中等配置电脑的更好的方法?
多谢。
首先,也是最重要的一点:您需要足够的内存,至少是二进制文件大小的 2 倍,甚至 3 倍,才能在内存中直接从 Parquet 数据表传输到 JMP 数据表。请使用 Python 集成和 PyArrow Python 包。
import jmp
from jmputils import jpip
jpip('install','pyarrow')
这是 JMP 18 的示例脚本,它直接遍历 parquet 文件并使用数据从 Python 构建数据表,所有数据都在内存中。
在 JMP 18 中,您需要从 Python 中逐列遍历数据和数据表的每一列。您可以直接遍历 Parquet 模式和数据,也可以将 Parquet 表转换为 Pandas 数据框。在 $SAMPLE_SCRIPTS/Python/dt2pandas2dt.jsl 和 .py 脚本中可以找到从 Pandas 数据框转换为 jmp.DataTable 对象的示例。
# parquet.py
# Author: Paul R. Nelson
# JMP Statistical Discovery LLC
#
# Description:
# Directly read a pyarrow table and create a JMP datatable.
# The data for this file comes from a repository that is Apache licensed.
# https://github.com/Teradata/kylo/blob/master/samples/sample-data/parquet/userdata1.parquet
#
import jmp
import pyarrow.parquet as pq
ver = jmp.__version__.split('.')
if(ver[0] == '0' and ver[1] < '5'):
print('This version requires JMP 18.0 EA-5 or newer.')
pq_Table = pq.read_table('/Your_path/to/userdata1.parquet')
#print(pq_Table)
print(f'Table Rows: {len(pq_Table)}' )
print(f'Table Shape: {pq_Table.shape}')
print(f'Table Schema:\n{pq_Table.schema}')
print(f'Column Names: {pq_Table.column_names}')
#print(pq_Table.columns)
print(f'Num Columns: {pq_Table.num_columns}')
dt = jmp.DataTable('From Parquet', pq_Table.num_rows)
dt.new_column('first_name', jmp.DataType.Character)
dt.new_column('last_name', jmp.DataType.Character)
dt.new_column('Salary')
# set column properites (widths)
jmp.run_jsl('''
// Change column display width: last_name
Data Table( "From Parquet" ):last_name << Set Display Width( 105 );
// Change column display width: Salary
Data Table( "From Parquet" ):Salary << Set Display Width( 90 );
''')
#Create a data table column from a Python list
dt[0] = pq_Table.column(2).to_pylist()
dt[1] = pq_Table.column(3).to_pylist()
dt[2] = pq_Table.column(10).to_pylist()
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对于 JMP 19 EA-4+ 来说,情况要好得多。
import jmp
import numpy as np
import pandas as pd
import pyarrow.parquet as pq
#parque sample files from
# https://github.com/Teradata/kylo/tree/master/samples/sample-data/parquet
pq_Table = pq.read_table('/Your_path/to/userdata1.parquet')
pd_table = pq_Table.to_pandas()
#create table in memory from pandas datadata frame.
dt = jmp.from_dataframe(pd_table)
#Same Disclaimer applies.
Python 方法可能比下面的方法更好。但这确实有效,至少对于一个玩具 Parquet 文件来说是这样。
有一个 Apache Drill 项目可以读取 Parquet 文件;它想成为 JDBC(可惜是 Java,而不是 ODBC),而且它的 ODBC 驱动程序(如果还存在的话)可能不是免费的。但它有一个基于 REST 的 API,JSL 可以做到这一点。
这篇文章的步骤 1、2、3 指明了正确的方向(感谢 @ robertspierre) 。我不确定如何在 Windows 上提取文件;Linux 可以,一些 Windows 工具可能也可以。我使用了https://drill.apache.org/download/并选择了“适用于 Hadoop 3 和非 Hadoop 环境的 Drill,直接下载”。我还从https://learn.microsoft.com/en-us/java/openjdk/download下载了 microsoft-jdk-21.0.6-windows-x64.msi 文件。
我将展开的 apache-drill-1.21.2 目录(来自 tar.gz)留在桌面上并像这样启动它:

进入 apache-drill-1.21.2,然后运行 bin/drill-embedded.bat。然后,我针对提供的 parquet 文件进行了查询,其实你不需要这样做,因为……启动 JMP 并运行以下脚本:
fields = Associative Array();
fields["queryType"] = "SQL";
fields["query"] = "SELECT * FROM `dfs`.`C:\Users\c\Desktop\apache-drill-1.21.2\sample-data\nation.parquet`";
s = New HTTP Request( URL( "localhost:8047/query.json" ), Method( "POST" ), JSON( Fields( fields ) ), Headers( {"Accept: application/json"} ) ) <<SEND></SEND>
<P>并得到此表:</P>
<BR />
<P><SPAN class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><span class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_1-1744504821964.png" style="width: 999px;"><img src="https://us.v-cdn.net/6038925/uploads/images/74790iDA8A4CC22DE4CBA3/Craige_Hales_1-1744504821964.png" role="button" title="Craige_Hales_1-1744504821964.png" alt="Craige_Hales_1-1744504821964.png" /></span></SPAN></SPAN></SPAN></SPAN></SPAN></SPAN></P>
<BR />
<P>当您启动上面的钻取过程时,它会启动一个处理来自 JSL 的 REST api 请求的 Web 服务器;它还有一个 Web 界面,我认为这对于读取 parquet 文件来说并不有趣。</P>
<P><SPAN class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Craige_Hales_2-1744505945837.png" style="width: 999px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><SPAN class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><span class="lia-inline-image-display-wrapper" image-alt="Craige_Hales_2-1744505945837.png" style="width: 989px;"><img src="https://us.v-cdn.net/6038925/uploads/images/74791i98CF0F2C6E15C248/Craige_Hales_2-1744505945837.png" role="button" title="Craige_Hales_2-1744505945837.png" alt="Craige_Hales_2-1744505945837.png" /></span></SPAN></SPAN></SPAN></SPAN></SPAN></SPAN></P>
<P><A href="https://drill.apache.org/docs/rest-api-introduction/#query" target="_blank" rel="nofollow noopener noreferrer">https://drill.apache.org/docs/rest-api-introduction/#query 可能对 api 有帮助。</A></P>
<BR />
<P>在你对此进行过多思考之前,先阅读一些有趣的内容:</P>
<P><A href="https://www.starburst.io/blog/the-death-of-apache-drill/" target="_blank" rel="noopener nofollow noreferrer">https://www.starburst.io/blog/the-death-of-apache-drill/</A></P>
<P><A href="https://stackoverflow.com/questions/59754457/mapr-driver-discontinued-for-apache-drill-what-now" target="_blank" rel="noopener nofollow noreferrer">https://stackoverflow.com/questions/59754457/mapr-driver-discontinued-for-apache-drill-what-now</A></P>
<P>但仍然有活动:</P>
<P><A href="https://github.com/apache/drill" target="_blank" rel="noopener nofollow noreferrer">https://github.com/apache/drill</A></P>
<BR />我可以在哪里试用 JMP EA 版本?我的 Parquet 数据列太多,无法明确定义每一列,所以使用 from_dataframe() 非常诱人。
联系 JMP 销售人员,他们有一个早期采用者计划。不过,我认为如果您可以通过 MyJMP 门户访问 JMP 18,您应该可以访问早期采用者版本。不过,也许还需要填写一份额外的保密表格/步骤。