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JMP Genomics r2 >1.0

How can it be, that I am getting CorrCoeff2 values above 1.0, up to 2.0?

Analytics

Re: JMP Genomics r2 >1.0

Can't tell from what you posted. Could you provide some info? What version of JMP, which OS, and perhaps screen shots or the journal of the analysis you performed.

Re: JMP Genomics r2 >1.0

Thanks for the reply,

Attached is an Excel file telling the story. I am using JMP Genomics whose
data are presented in the first worksheet 'JMP'. I submitted the genotypes
presented in the worksheet 'Genotypes' to the LD analysis (worksheet 'JMP
Linkage Disequilibrium'), and got the LD r2 matrix presented in the last
worksheet. Values above 1.0 are labeled. By definition, r2 cannot have a
value above 1.0. I am using JMP Genomics for some years, many LD analyses,
and I never saw something like this. What is going on?

Thanks,

Ehud Lipkin

Re: JMP Genomics r2 >1.0

Hi,
I think you forgot to include the file(s) you referred to in your last message or there might be a problem with the JMP forum attachment module.
Best,
TS

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