279934_zh-TW

liliconcom

無法加載列列表以進行權變分析

你好，

 

我想進行權變分析。我有一個用於Y的列名（註釋）列表。不幸的是，由於（錯誤的）synthax，我只使用第一個列名，其餘的被忽略。

 

腳本的其餘部分運行良好。

 

任何建議，以糾正下頜骨。

 

謝謝

 

塞巴斯蒂安

 

annotationls = {Name("N(BDNF signaling pathway)"), Name("N(Cross-presentation of particulate exogenous antigens (phagosomes))"), Name("N(Immune system)"), Name("N(Inflammasomes)"), Name("N(Inflammatory response pathway)"), Name("N(Innate immune system)"), Name("N(Integrin alpha-2b beta-3 signaling)"), Name("N(Integrin beta-2 pathway)"), Name("N(Integrin beta-4 pathway)"), Name("N(Integrin beta-5 pathway)"), Name("N(Integrin cell surface interactions)"), Name("N(Integrin family cell surface interactions)"), Name("N(Integrin signaling pathway)"), Name("N(Integrin-linked kinase signaling)"), Name("N(Integrin-mediated cell adhesion)")};

modulals = {Name("Modulation - Abs(Fold change)> 1.5 & LogWorth Adj pvalue> 0.01")};
d={"test_article"};
u={"specimen_material_type"};

DGEsum = Data Table( "summary of DGE" );

enrich=DGEsum<<CONTINGENCY></CONTINGENCY>

腳本編寫回复：無法加載列列表以進行權變分析

您將需要使用Eval（）函數來擴展輸入列表。

names default to here(1);

annotationls = {Name("N(BDNF signaling pathway)"), 
 Name("N(Cross-presentation of particulate exogenous antigens (phagosomes))"), 
 Name("N(Immune system)"), Name("N(Inflammasomes)"), 
 Name("N(Inflammatory response pathway)"), 
 Name("N(Innate immune system)"),
 Name("N(Integrin alpha-2b beta-3 signaling)"), 
 Name("N(Integrin beta-2 pathway)"), 
 Name("N(Integrin beta-4 pathway)"), 
 Name("N(Integrin beta-5 pathway)"), 
 Name("N(Integrin cell surface interactions)"), 
 Name("N(Integrin family cell surface interactions)"), 
 Name("N(Integrin signaling pathway)"), 
 Name("N(Integrin-linked kinase signaling)"), 
 Name("N(Integrin-mediated cell adhesion)")
};

modulals = {Name("Modulation - Abs(Fold change)> 1.5 & LogWorth Adj pvalue> 0.01")};
d={"test_article"};
u={"specimen_material_type"};

byList = d||u;

DGEsum = Data Table( "summary of DGE" );

enrich=DGEsum<<CONTINGENCY></CONTINGENCY>