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No se puede cargar una lista de columnas para realizar un análisis de contingencia

Hola,

 

Quiero ejecutar un análisis de contingencia. Tengo una lista de nombres de columna (anotaciones) para usar para Y. Desafortunadamente, con el sintaxis (incorrecto) estoy usando solo el primer nombre de columna se lee y el resto se ignora.

 

El resto del guión funciona bien.

 

Cualquier sugerencia para corregir el Synthax sería apreciada.

 

Gracias

 

Sebastien

 

annotationls = {Name("N(BDNF signaling pathway)"), Name("N(Cross-presentation of particulate exogenous antigens (phagosomes))"), Name("N(Immune system)"), Name("N(Inflammasomes)"), Name("N(Inflammatory response pathway)"), Name("N(Innate immune system)"), Name("N(Integrin alpha-2b beta-3 signaling)"), Name("N(Integrin beta-2 pathway)"), Name("N(Integrin beta-4 pathway)"), Name("N(Integrin beta-5 pathway)"), Name("N(Integrin cell surface interactions)"), Name("N(Integrin family cell surface interactions)"), Name("N(Integrin signaling pathway)"), Name("N(Integrin-linked kinase signaling)"), Name("N(Integrin-mediated cell adhesion)")};

modulals = {Name("Modulation - Abs(Fold change)> 1.5 & LogWorth Adj pvalue> 0.01")};
d={"test_article"};
u={"specimen_material_type"};

DGEsum = Data Table( "summary of DGE" );

enrich=DGEsum<<CONTINGENCY></CONTINGENCY>

ScriptingRe: No se puede cargar una lista de columnas para realizar un análisis de contingencia

Deberá utilizar la función Eval () para expandir las listas de entrada.

names default to here(1);

annotationls = {Name("N(BDNF signaling pathway)"), 
 Name("N(Cross-presentation of particulate exogenous antigens (phagosomes))"), 
 Name("N(Immune system)"), Name("N(Inflammasomes)"), 
 Name("N(Inflammatory response pathway)"), 
 Name("N(Innate immune system)"),
 Name("N(Integrin alpha-2b beta-3 signaling)"), 
 Name("N(Integrin beta-2 pathway)"), 
 Name("N(Integrin beta-4 pathway)"), 
 Name("N(Integrin beta-5 pathway)"), 
 Name("N(Integrin cell surface interactions)"), 
 Name("N(Integrin family cell surface interactions)"), 
 Name("N(Integrin signaling pathway)"), 
 Name("N(Integrin-linked kinase signaling)"), 
 Name("N(Integrin-mediated cell adhesion)")
};

modulals = {Name("Modulation - Abs(Fold change)> 1.5 & LogWorth Adj pvalue> 0.01")};
d={"test_article"};
u={"specimen_material_type"};

byList = d||u;

DGEsum = Data Table( "summary of DGE" );

enrich=DGEsum<<CONTINGENCY></CONTINGENCY>